Subspace procrustes analysis

Postprint (author's final draft

Cage Active Contours for image warping and morphing

Cage Active Contours (CACs) have shown to be a framework for segmenting connected objects using a new class of parametric region-based active contours. The CAC approach deforms the contour locally by moving cage's points through affine transformations. The method has shown good performance for image segmentation, but other applications have not been studied. In this paper, we extend the method with new energy functions based on Gaussian mixture models to capture multiple color components per region and extend their applicability to RGB color space. In addition, we provide an extended mathematical formalization of the CAC framework with the purpose of showing its good properties for segmentation, warping, and morphing. Thus, we propose a multiple-step combined method for segmenting images, warping the correspondences of the object cage points, and morphing the objects to create new images. For validation, both quantitative and qualitative tests are used on different datasets. The results show that the new energies produce improvements over the previously developed energies for the CAC. Moreover, we provide examples of the application of the CAC in image segmentation, warping, and morphing supported by our theoretical conclusions

Data-driven System to Predict Academic Grades and Dropout

Nowadays, the role of a tutor is more important than ever to prevent students dropout and improve their academic performance. This work proposes a data-driven system to extract relevant information hidden in the student academic data and, thus, help tutors to offer their pupils a more proactive personal guidance. In particular, our system, based on machine learning techniques, makes predictions of dropout intention and courses grades of students, as well as personalized course recommendations. Moreover, we present different visualizations which help in the interpretation of the results. In the experimental validation, we show that the system obtains promising results with data from the degree studies in Law, Computer Science and Mathematics of the Universitat de Barcelona

A Contrast Invariant Approach to Motion Estimation. In:

Summary. We consider a contrast invariant approach to motion estimation which uses the direction of the gradient fields. The approach is region-based and assumes an affine motion model for each region. We propose to check if the estimated motion parameters fit properly the apparent motion of the region by a motion significance analysis. Moreover, we propose a motion field improvement which consider those regions that are not properly estimated according to the significance analysis and reassign them a motion model of a properly estimated neighboring region

Domain generalization in deep learning-based mass detection in mammography: A large-scale multi-center study

Computer-aided detection systems based on deep learning have shown great potential in breast cancer detection. However, the lack of domain generalization of artificial neural networks is an important obstacle to their deployment in changing clinical environments. In this work, we explore the domain generalization of deep learning methods for mass detection in digital mammography and analyze in-depth the sources of domain shift in a large-scale multi-center setting. To this end, we compare the performance of eight state-of-the-art detection methods, including Transformer-based models, trained in a single domain and tested in five unseen domains. Moreover, a single-source mass detection training pipeline is designed to improve the domain generalization without requiring images from the new domain. The results show that our workflow generalizes better than state-of-the-art transfer learning-based approaches in four out of five domains while reducing the domain shift caused by the different acquisition protocols and scanner manufacturers. Subsequently, an extensive analysis is performed to identify the covariate shifts with bigger effects on the detection performance, such as due to differences in patient age, breast density, mass size, and mass malignancy. Ultimately, this comprehensive study provides key insights and best practices for future research on domain generalization in deep learning-based breast cancer detection

Learning Analytics para el personal académico

Hoy en día, el Learning Analytics (LA), siendo una disciplina relacionada con la ciencia de datos, se ha convertido en una herramienta muy útil para la gestión universitaria. En nuestro caso, proponemos un sistema de LA para ayudar al personal académico en la gestión de grados universitarios. El objetivo principal de nuestro sistema de LA es recopilar información de diferentes fuentes, que comúnmente están disponibles para el personal universitario, y facilitar su comprensión gracias a las visualizaciones y predicciones. En particular, proponemos técnicas de aprendizaje automático para extraer tres indicadores clave para la gestión y la evaluación de la calidad de los títulos universitarios, y que son difíciles de analizar con herramientas estándar. Este sistema de LA se presenta como un conjunto de paneles fáciles de usar dirigidos a ayudar en el proceso de toma de decisiones para gerentes universitarios, decanos, directores o coordinadores de cursos.The field of Learning Analytics (LA), as a data science related discipline, has become a very useful tool for auditing and managing. In this work we propose a LA system for academic personnel to help them in university degrees management. The main goal of our LA system is to gather information from different sources –which are commonly available for university personnel– and make it easier to understand by means of prediction and visualization. In particular, we propose machine learning techniques to extract three key indicators for the management and quality assurance of the university degrees, which are difficult to analyze with off-the-shelf tools. This LA system is presented as a set of user-friendly dashboards addressed to help in the decision making process for university managers, such faculty deans, headmasters or course coordinators.Esta investigación ha recibido soporte parcial de la Universitat de Barcelona: Convocatòria d’Ajuts a la Recerca en Docència Universitària de l’Institut de Ciències de l’Educació de la Universitat de Barcelona REDICE-18 y Proyecto 2014PID-UB/068

An end-to-end framework for intima media measurement and atherosclerotic plaque detection in the carotid artery

Background and objectives: The detection and delineation of atherosclerotic plaque are usually manually performed by medical experts on the carotid artery. Evidence suggests that this manual process is subject to errors and has a large variability between experts, equipment, and datasets. This paper proposes a robust end-to-end framework for automatic atherosclerotic plaque detection. Methods: The proposed framework is composed of: (1) a semantic segmentation model based on U-Net, with EfficientNet as the backbone, that obtains a segmentation mask with the carotid intima-media region; and (2) a convolutional neural network designed using Bayesian optimization that simultaneously performs a regression to get the average and maximum carotid intima media thickness, and a classification to determine the presence of plaque. Results: Our approach improves the state-of-the-art in both co and bulb territories in the REGICOR database, with more than 8000 images, while providing predictions in real-time. The correlation coefficient was 0.89 in the common carotid artery and 0.74 for bulb region, and the F1 score for atherosclerotic plaque detecting was 0.60 and 0.59, respectively. The experimentation carried out includes a comparison with other fully automatic methods for carotid intima media thickness estimation found in the literature. Additionally, we present an extensive experimental study to evaluate the robustness of our proposal, as well as its suitability and efficiency compared to different versions of the framework. Conclusions: The proposed end-to-end framework significantly improves the automatic characterization of atherosclerotic plaque. The generation of the segmented mask can be helpful for practitioners since it allows them to evaluate and interpret the model's results by visual inspection. Furthermore, the proposed framework overcomes the limitations of previous research based on ad-hoc post-processing, which could lead to overestimations in the case of oblique forms of the carotid artery

Subspace procrustes analysis

Procrustes Analysis (PA) has been a popular technique to align and build 2-D statistical models of shapes. Given a set of 2-D shapes PA is applied to remove rigid transformations. Then, a non-rigid 2-D model is computed by modeling (e.g., PCA) the residual. Although PA has been widely used, it has several limitations for modeling 2-D shapes: occluded landmarks and missing data can result in local minima solutions, and there is no guarantee that the 2-D shapes provide a uniform sampling of the 3-D space of rotations for the object. To address previous issues, this paper proposes Subspace PA (SPA). Given several instances of a 3-D object, SPA computes the mean and a 2-D subspace that can simultaneously model all rigid and non-rigid deformations of the 3-D object. We propose a discrete (DSPA) and continuous (CSPA) formulation for SPA, assuming that 3-D samples of an object are provided. DSPA extends the traditional PA, and produces unbiased 2-D models by uniformly sampling different views of the 3-D object. CSPA provides a continuous approach to uniformly sample the space of 3-D rotations, being more effcient in space and time. Experiments using SPA to learn 2-D models of bodies from motion capture data illustrate the benefits of our approach.Preprin

Subspace Procrustes Analysis

Procrustes Analysis (PA) has been a popular technique to align and build 2-D statistical models of shapes. Given a set of 2-D shapes PA is applied to remove rigid transformations. Then, a non-rigid 2-D model is computed by modeling (e.g., PCA) the residual. Although PA has been widely used, it has several limitations for modeling 2-D shapes: occluded landmarks and missing data can result in local minima solutions, and there is no guarantee that the 2-D shapes provide a uniform sampling of the 3-D space of rotations for the object. To address previous issues, this paper proposes Subspace PA (SPA). Given several instances of a 3-D object, SPA computes the mean and a 2-D subspace that can simultaneously model all rigid and non-rigid deformations of the 3-D object. We propose a discrete (DSPA) and continuous (CSPA) formulation for SPA, assuming that 3-D samples of an object are provided. DSPA extends the traditional PA, and produces unbiased 2-D models by uniformly sampling different views of the 3-D object. CSPA provides a continuous approach to uniformly sample the space of 3-D rotations, being more efficient in space and time. Experiments using SPA to learn 2-D models of bodies from motion capture data illustrate the benefits of our approach

A fully-automatic caudate nucleus segmentation of brain MRI: Application in volumetric analysis of pediatric attention-deficit/hyperactivity disorder

Background Accurate automatic segmentation of the caudate nucleus in magnetic resonance images (MRI) of the brain is of great interest in the analysis of developmental disorders. Segmentation methods based on a single atlas or on multiple atlases have been shown to suitably localize caudate structure. However, the atlas prior information may not represent the structure of interest correctly. It may therefore be useful to introduce a more flexible technique for accurate segmentations. Method We present Cau-dateCut: a new fully-automatic method of segmenting the caudate nucleus in MRI. CaudateCut combines an atlas-based segmentation strategy with the Graph Cut energy-minimization framework. We adapt the Graph Cut model to make it suitable for segmenting small, low-contrast structures, such as the caudate nucleus, by defining new energy function data and boundary potentials. In particular, we exploit information concerning the intensity and geometry, and we add supervised energies based on contextual brain structures. Furthermore, we reinforce boundary detection using a new multi-scale edgeness measure. Results We apply the novel CaudateCut method to the segmentation of the caudate nucleus to a new set of 39 pediatric attention-deficit/hyperactivity disorder (ADHD) patients and 40 control children, as well as to a public database of 18 subjects. We evaluate the quality of the segmentation using several volumetric and voxel by voxel measures. Our results show improved performance in terms of segmentation compared to state-of-the-art approaches, obtaining a mean overlap of 80.75%. Moreover, we present a quantitative volumetric analysis of caudate abnormalities in pediatric ADHD, the results of which show strong correlation with expert manual analysis. Conclusion CaudateCut generates segmentation results that are comparable to gold-standard segmentations and which are reliable in the analysis of differentiating neuroanatomical abnormalities between healthy controls and pediatric ADHD